{ "_id": "6a1ed4dcb401979e7340e3c3", "Package": "pairscale", "Type": "Package", "Title": "Pairwise Rescaling of Numeric Matrices", "Version": "1.0", "Authors@R": "person(given = \"Frank\",\nfamily = \"Koopmans\",\nrole = c(\"aut\", \"cre\"),\nemail = \"ftwkoopmans@gmail.com\",\ncomment = c(ORCID = \"0000-0002-4973-5732\"))", "Description": "Normalization of numerical matrices by minimizing the\nmean/median/mode difference between all column pairs.", "URL": "https://github.com/ftwkoopmans/pairscale/", "License": "AGPL (>= 3)", "Encoding": "UTF-8", "SystemRequirements": "C++20", "Config/testthat/edition": "3", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Language": "en-US", "Repository": "https://ftwkoopmans.r-universe.dev", "Date/Publication": "2026-05-19 15:02:36 UTC", "RemoteUrl": "https://github.com/ftwkoopmans/pairscale", "RemoteRef": "HEAD", "RemoteSha": "67e490b2cc5c538de0ca870205062fa1d568e49d", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-20 11:11:49 UTC", "User": "root" }, "Author": "Frank Koopmans [aut, cre] (ORCID:\n)", "Maintainer": "Frank Koopmans ", "MD5sum": "267cfe4af9372e16aa5f556db0344da5", "_user": "ftwkoopmans", "_type": "src", "_file": "pairscale_1.0.tar.gz", "_fileid": "20fdec0fc32598d1bb3d087c6a6113d3c50e6c035371553e4cdb7ae9d705fb9c", "_filesize": 157501, "_sha256": "20fdec0fc32598d1bb3d087c6a6113d3c50e6c035371553e4cdb7ae9d705fb9c", "_created": "2026-05-20T11:11:49.000Z", "_published": "2026-06-02T13:04:28.513Z", "_distro": "noble", "_jobs": [ { "job": 79076751999, "time": 182, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7108442794" }, { "job": 79076751931, "time": 160, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7108435015" }, { "job": 79076752790, "time": 202, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7108449424" }, { "job": 79076752089, "time": 164, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7108436092" }, { "job": 79076752140, "time": 231, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7108448889" }, { "job": 79076752445, "time": 286, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7108471990" }, { "job": 79076751834, "time": 214, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7108436627" }, { "job": 79076751996, "time": 373, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7108497844" }, { "job": 79076751489, "time": 226, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7108380837" }, { "job": 79076751106, "time": 174, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7358442928" }, { "job": 79076751924, "time": 215, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7108453889" }, { "job": 79076752382, "time": 157, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7108433794" }, { "job": 79076751839, "time": 229, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7108458668" } ], "_buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/ftwkoopmans/pairscale", "_commit": { "id": "67e490b2cc5c538de0ca870205062fa1d568e49d", "author": "Frank Koopmans ", "committer": "Frank Koopmans ", "message": "documentation updates\n", "time": 1779202956 }, "_maintainer": { "name": "Frank Koopmans", "email": "ftwkoopmans@gmail.com", "login": "ftwkoopmans", "orcid": "0000-0002-4973-5732", "description": "", "uuid": 12510802 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "version": ">= 14.7", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.0.5", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "ftwkoopmans", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-19", "n": 2 }, { "week": "2026-21", "n": 1 } ], "_tags": [ { "name": "v1.0", "date": "2026-05-19" } ], "_stars": 0, "_contributors": [ { "user": "ftwkoopmans", "count": 3, "uuid": 12510802 } ], "_userbio": { "uuid": 12510802, "type": "user", "name": "Frank Koopmans" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pairscale" }, "_devurl": "https://github.com/ftwkoopmans/pairscale", "_searchresults": 0, "_topics": [ "openblas", "cpp", "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/pairscale.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/ftwkoopmans/pairscale", "_realowner": "ftwkoopmans", "_cranurl": true, "_releases": [ { "version": "1.0", "date": "2026-05-19" } ], "_exports": [ "pairdiff_madmean", "pairdiff_mean", "pairdiff_median", "pairdiff_mode", "pairdiff_trimmedmean", "pairscale_madmean", "pairscale_mean", "pairscale_median", "pairscale_mode", "pairscale_trimmedmean", "solve_graph_laplacian", "vector_madmean", "vector_mean", "vector_median", "vector_mode", "vector_trimmedmean" ], "_help": [ { "page": "pairdiff_madmean", "title": "Distance matrix between columns of a matrix using their MAD-trimmed mean differences", "topics": [ "pairdiff_madmean" ] }, { "page": "pairdiff_mean", "title": "Distance matrix between columns of a matrix using their mean differences", "topics": [ "pairdiff_mean" ] }, { "page": "pairdiff_median", "title": "Distance matrix between columns of a matrix using their trimmed median differences", "topics": [ "pairdiff_median" ] }, { "page": "pairdiff_mode", "title": "Distance matrix between columns of a matrix using their mode differences", "topics": [ "pairdiff_mode" ] }, { "page": "pairdiff_trimmedmean", "title": "Distance matrix between columns of a matrix using their trimmed mean differences", "topics": [ "pairdiff_trimmedmean" ] }, { "page": "pairscale_madmean", "title": "Normalize matrix columns using their MAD-trimmed mean differences", "topics": [ "pairscale_madmean" ] }, { "page": "pairscale_mean", "title": "Normalize matrix columns using their mean differences", "topics": [ "pairscale_mean" ] }, { "page": "pairscale_median", "title": "Normalize matrix columns using their median differences", "topics": [ "pairscale_median" ] }, { "page": "pairscale_mode", "title": "Normalize matrix columns using their mode differences", "topics": [ "pairscale_mode" ] }, { "page": "pairscale_trimmedmean", "title": "Normalize matrix columns using their trimmed-mean differences", "topics": [ "pairscale_trimmedmean" ] }, { "page": "solve_graph_laplacian", "title": "graph Laplacian approach to finding normalization factors", "topics": [ "solve_graph_laplacian" ] }, { "page": "vector_madmean", "title": "Compute MAD-trimmed mean value of a vector, with optional filtering for N datapoints", "topics": [ "vector_madmean" ] }, { "page": "vector_mean", "title": "Compute mean value of a vector, with optional filtering for N datapoints", "topics": [ "vector_mean" ] }, { "page": "vector_median", "title": "Compute median value of a vector, with optional filtering for N datapoints", "topics": [ "vector_median" ] }, { "page": "vector_mode", "title": "Compute mode of a vector, with optional filtering for N datapoints", "topics": [ "vector_mode" ] }, { "page": "vector_trimmedmean", "title": "Compute trimmed mean value of a vector, with optional filtering for N datapoints", "topics": [ "vector_trimmedmean" ] } ], "_readme": "https://github.com/ftwkoopmans/pairscale/raw/HEAD/README.md", "_rundeps": [ "Rcpp", "RcppArmadillo" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_score": 3, "_indexed": true, "_nocasepkg": "pairscale", "_universes": [ "ftwkoopmans" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0", "date": "2026-05-20T11:14:32.000Z", "distro": "noble", "arch": "aarch64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "c4e261f9c9a5b8834bdc77f54fa2a7930ddfb047fb3f340553d4a1eb72499fc5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.7.0", "os": "linux", "version": "1.0", "date": "2026-05-20T11:14:18.000Z", "distro": "noble", "arch": "x86_64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "6bbd7dded3787ba52e6f8c63e2ba78499f525a322023ea5164fccb0f9eaed5f9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.6.0", "os": "linux", "version": "1.0", "date": "2026-05-20T11:14:56.000Z", "distro": "noble", "arch": "aarch64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "45133582c882dc0ac9616f2051df75587fcf142a97a11ab3a4612336e544122a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.6.0", "os": "linux", "version": "1.0", "date": "2026-05-20T11:14:21.000Z", "distro": "noble", "arch": "x86_64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "e3a09135b377d5e1172ab22d6581910e6071607e9160a500d643d2bac18890fe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.5.3", "os": "mac", "version": "1.0", "date": "2026-05-20T11:15:04.000Z", "arch": "aarch64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "a588ee7aab4feb8e4be456d7a3a2d230077e683f09079ee2a0442fd8d9f0d9c6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.5.3", "os": "mac", "version": "1.0", "date": "2026-05-20T11:15:40.000Z", "arch": "x86_64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "e81ee3d02a2e1c75ffce70d5b259c86e98a02ddca271fb736337075719a612ff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.6.0", "os": "mac", "version": "1.0", "date": "2026-05-20T11:14:38.000Z", "arch": "aarch64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "2b44085ed94a0778dc1393e8fb290bf9959f5f0a971521be2c9918d8bf5761f9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.6.0", "os": "mac", "version": "1.0", "date": "2026-05-20T11:16:17.000Z", "arch": "x86_64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "3908613393b1d8652a545fb2bf88144d2158baeabb412e1de7c5bb0b35df9e65", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.7.0", "os": "win", "version": "1.0", "date": "2026-05-20T11:13:41.000Z", "arch": "x86_64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "9bcc40917dce7414345976f02f732ee5d2d89c2ac2256a49c4d067ce84176bc3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.5.3", "os": "win", "version": "1.0", "date": "2026-05-20T11:13:27.000Z", "arch": "x86_64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "55fcc78fde8ec9754cacde6ec466905a693cf134b2634f9833a32d9d85e788cc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.6.0", "os": "win", "version": "1.0", "date": "2026-05-20T11:14:06.000Z", "arch": "x86_64", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "83479d0938bf1e9f55af9e560f42077d81939966852d9e48d35afca19451eb6d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" }, { "r": "4.6.0", "os": "wasm", "version": "1.0", "date": "2026-06-02T13:03:36.000Z", "arch": "emscripten", "commit": "67e490b2cc5c538de0ca870205062fa1d568e49d", "fileid": "01eb204777cf1bb1ea714cdbfe1cbb1482035c64e7ac25cbfb39d012b79e1d92", "status": "success", "buildurl": "https://github.com/r-universe/ftwkoopmans/actions/runs/26158628321" } ] }